Here are some files in supplement to the paper "Identification of new small non-coding RNAs from tobacco and Arabidopsis" B. Billoud, R. De Paepe, D. Baulcombe and M. Boccara, Biochimie 2005, 87 (9-10):905-910.
PatBank is the pattern-matching software used in this study.
It was developped in order to:
You can download PatBank.
MiRfold searches for a good miRNA-like folding in the sequence surrounding a putative miRNA. It was optimized on plant miRNAs.
You can download MiRfold.